PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235529.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 776aa    MW: 86445.6 Da    PI: 6.0931
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235529.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.56.6e-20629725295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++ +W+++++y  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ ++ 
  XP_008235529.1 629 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISIPMEDiGTSHVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SDvKCN 720
                     79*************************999999********7777*********777777777777.********************..555888 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  XP_008235529.1 721 KYMIR 725
                     77766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-28621734IPR015300DNA-binding pseudobarrel domain
CDDcd100151.94E-34626727No hitNo description
SuperFamilySSF1019361.06E-22627723IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.207628730IPR003340B3 DNA binding domain
SMARTSM010194.5E-20628730IPR003340B3 DNA binding domain
PfamPF023622.0E-16629724IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MKDVNIPISD GFGGGGAMEE LEDQEDNLGV DPSEMWLDDN DQETALLADV NDPSIFYNDH  60
FPPLPDFPCM SSSSSSSSTP APVKSVTSSS TSSSVSSSSS AASWAILRSD AEEDGERRQQ  120
HHHNSYNHRH QYSQADDQAV DVHALSSTAS MEISQPSDLG REGGAMDCMG AMETFGYMDL  180
FESNEFFDPS SIFQSDSLLM EQFQQDDDHQ QLLAPHQLQD PNEATAIIPQ QEQEQEVAVR  240
DDENNKKDDQ KENKEPDDMA MVFLEWLRSN RETVSAEDLR SVKIKKSTIE CAARRLGGGK  300
EAMKQLLKLV LEWVQTNHLQ KRRGNSLTTK DADIVAQQQY QDPFQNPNPN TSPRVLESNP  360
SCSFTQTPWM APPPHAAYDH AGGILVPTPP PPPPPAAYPS MMGYIAPDQY VNGPGPYQPS  420
PEYHHMIDSG QSTWPSSPFG MGTAHYGSFP DNNIHLAPPP QHHPQAFGYG SQYQPYQYFP  480
LNGEHQLMRL GSSATKEARK KRMARQRRLV SHHRHGHQQQ QHLNVQMPDH LLHQQHTRLV  540
GNAGDLNCAN SVPLQANPGN WFYWPTATAA PAMMPSITQE AAPPPPVQQM DRPASTQAQN  600
YSQGRSAAQE RQERRQGWKS EKNLKFLLQK VLKQSDVGSL GRIVLPKKEA ETHLPELEAR  660
DGISIPMEDI GTSHVWNMRY RYWPNNKSRM YLLENTGDFV RANGLQEGDF IVIYSDVKCN  720
KYMIRGVKVR QAGPKSEGNK RPGKSQRNQH ANTPAGTNGS SPSSVSASAS ATHRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4110730.0AF411073.1 Prunus avium viviparous protein (vp1) mRNA, complete cds.
GenBankAF4268320.0AF426832.1 Prunus avium ABI3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235529.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
SwissprotQ015931e-172ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLM5W5U10.0M5W5U1_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s25330.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-142B3 family protein